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† Indica vuelos charters hacia Estados Unidos, que requieren una ización especial por el gobierno de Cuba.
| Aerolínea | Destino | Terminal |
|---|---|---|
| Aerocaribbean | Baracoa, Cayo Coco, Holguín, Managua, San Pedro Sula, Santiago de Cuba | 1, 5 |
| Aeroflot | Moscow-Sheremetyevo | 3 |
| Aerogaviota | Cayo Coco, Cayo Largo del Sur, Cayo Santa María, Holguín, Kingston, Montego Bay, Nassau, Santiago de Cuba, Trinidad | 1, 3 |
| Air Canada | Toronto-Pearson | 3 |
| Air Caraïbes | Pointe-à-Pitre | 3 |
| Air Europa | Madrid | 3 |
| Air France | Paris-Charles de Gaulle | 3 |
| American Airlines † | Miami, New York-JFK, Tampa | 2 |
| Avianca | Bogota | 3 |
| Bahamasair | Nassau | 3 |
| Blue Panorama Airlines | Managua, Milan-Malpensa, Rome-Fiumicino | 3 |
| Cayman Airways | Grand Cayman | 3 |
| Condor | Frankfurt | 3 |
| Conviasa | Caracas | 3 |
| Copa Airlines | Panama City | 3 |
| Copa Airlines operated by Copa Airlines Colombia | Bogota | 3 |
| Cubana | Baracoa, Bayamo, Camagüey, Cayo Coco, Cayo Largo del Sur, Ciego de Ávila, Guantánamo, Holguín, Manzanillo, Nueva Gerona, Santa Clara, Santiago de Cuba, Victoria de las Tunas | 1 |
| Cubana | Bogota, Buenos Aires-Ezeiza, Cancún, Caracas, Madrid, Mexico City, Montréal-Trudeau, Paris-Orly, Santo Domingo, Toronto-Pearson. Seasonal: Halifax | 3 |
| Delta Air Lines † | Atlanta, Miami | 2 |
| Iberia | Madrid [ends 31 March 2013] | 3 |
| Interjet | Mexico City, Monterrey | 3 |
| JetBlue Airways † | Fort Lauderdale | 2 |
| KLM | Amsterdam | 3 |
| Lacsa | San José de Costa Rica | 3 |
| LAN Perú | Lima | 3 |
| Miami Air International † | Miami | 2 |
| Neos | Milan-Malpensa | 3 |
| Sky King † | Chicago-O'Hare, Miami, New York-JFK, Tampa | 2 |
| Sunwing Airlines | Seasonal: Montréal-Trudeau | 3 |
| TAAG Angola Airlines | Luanda | 3 |
| TACA Airlines | San Salvador | 3 |
| TACA Perú | Lima | 3 |
| TAME | Quito | 2 |
| United Airlines † | Miami | 2 |
| Virgin Atlantic Airways | London-Gatwick | 3 |